Cell culture and harvesting
1. Inoculate 50 mL medium in 100 ml Erlenmeyer flasks with plasmid-containing overnight cultures to an inital OD600 of 0.05. At least three biological replicates of each sample should be used and a negative control (culture with an empty vector) should be added. When the cultures reach an OD600 of about 0.6, induce the pBAD promotor with a final concentration of 0.2% (w/v) arabinose.
2. Incubate the cultures for at least 30 minutes to allow expression of the glpD fusion gene. Harvest 20mL for the reporter enzyme assay by centrifugation at 4000rpm for 10 minutes at 4°C.
If a transcript analysis is also desired, further 8mL culture can be harvested in parallel (4000rpm, 10 minutes, 4°C). The pellets can be stored at -80°C for later RNA Isolation (compare the Method “Northern blot analysis”).
3. Resuspend the pellets for the reporter enzyme assay in 1mL glpD lysis buffer. Lyse the cells vial shaking with glass beads (500 mg/reaction tube) in a FastPrepTM (MP Biomedicals; 3x 45 seconds at 6.5 intensity with 20 seconds pauses on ice in between)
4. Sediment glass beads and cell debris by centrifugation (13000 rpm, 10 minutes, 4°C). Transfer the cleared lysate to a new reaction tube.
Determination of the specific GlpD reporter enzyme activity
5. Start the MTP photometer and equilibrate it at 37oC for at least 30 minutes.
6. For every reaction pipette 65µL of suitable dilutions of the lysate into a well of a microtiter plate. We recommend 1:10; 1:100 and 1:200 dilutions and technical duplicates for every sample.
7. Add 160µL of the glpD reaction buffer (including the sn-G3P), immediately transfer the MTP to the photometer and start the measurement.
8. The change of absorption is measured at 570 nm for 30 minutes at 20 second intervals with shaking of the plate bevor each measurement.
9. For the analysis of the volume activity only dilutions can be used that exhibit a linear increase of absorption for at least 3 minutes. The photometer software is used to calculate the change in extinction per minute (ΔE/min) for all samples.
10. The extinction change in the negative control is subtracted from the extinction changes of all samples to yield the GlpD-specific extinction change.
11. Calculate the GlpD volume activity using the following formula with the ΔE/min:
Volume activity [U/mL]= ΔE*min-1*ε-1*d-1*D
U: Enzyme activity (µmol*min-1) 1 U = 16.67nkat
ΔE/min: Change in extinction at 570 nm (min-1)
ε: Extinction coefficient of the formazan product (17mM-1*cm-1)
d: thickness of the cuvette [cm] (300 μl in a 96 well MTP: 0,95 cm)
D: Dilution of the sample
12. To quantify the protein concentration, the PIERCETM BCA (Bicinchoninic acid) protein assay kit is used with suitable dilutions of the lysates according to the instructions of the manufacturer. The assay has been adapted to 96 well MTPs to enable the parallel processing of many samples. Bovine serum albumin (BSA) is used to generate a standard curve, using concentrations form 0 mg/ml to 2 mg/ml. The colorimetric biuret-reaction results in the formation of a blue color, which can be quantified photometrically at 562 nm. The BSA standard curve is used to calculate the protein concentrations of all samples (mg/ml).
13. The specific GlpD activity [U/mg] is calculated by dividing the volume activity [U/ml] with the protein concentration [mg/ml].