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Method Article
GPCR identification in parasitic worm genome assemblies
Nicolas Wheeler
Zamanian Lab
Corresponding Author
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This work is licensed under a CC BY 4.0 License. Read Full License
G protein-couple receptors are often a primary point of interest in parasitic worms. Thus, after the sequencing of the genome of one of these worms, GPCR identification and annotation is often a priority. Here, we describe a computational pipeline for the identification of orthologous GPCRs in a set of over 50 newly sequenced genomes from parasitic worms.
Keywords
genome sequencing, assembly, parasites, transmembrane protein, GPCRs, genomes, assemblies, parasitic worms, helminths, nematodes, flatworms, platyhelminths, Nematoda, Platyhelminthes
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Original version of the protocol protex,2018.061 - original version The original version of this protocol included Michael Kimber as a contributing author. His name has been removed, because it was added in error. He had contributed to other related work, but not to this protocol. 9 August 2018
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This is a preprint. It has not completed peer review.
Method Article
GPCR identification in parasitic worm genome assemblies
Nicolas Wheeler
Zamanian Lab
Corresponding Author
Badges
Prescreen
This manuscript passed our Prescreen assessment
Complete author information
Appropriate declaration statements
Potential risks to human health
Prescreen
History
CURRENT STATUS: Posted
Version 1
Posted 17 May, 2018
No community comments so far
Metrics
Comments: 0
HTML Views: ...
License:
This work is licensed under a CC BY 4.0 License. Read Full License
G protein-couple receptors are often a primary point of interest in parasitic worms. Thus, after the sequencing of the genome of one of these worms, GPCR identification and annotation is often a priority. Here, we describe a computational pipeline for the identification of orthologous GPCRs in a set of over 50 newly sequenced genomes from parasitic worms.
Figure 1