Alternative splicing analysis of RNA-seq data using SAJR

doi:10.1038/protex.2018.029

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Method Article

Thomas Doktor, Caroline Heintz, Brage Andresen, William Mair

Thomas Doktor

Andresen's lab, University of Southern Denmark

Corresponding Author

Caroline Heintz

Harvard T. H. Chan School of Public Health

Brage Andresen

Andresen's lab, University of Southern Denmark

William Mair

Harvard T. H. Chan School of Public Health

DOI:

10.1038/protex.2018.029

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The full text of this article is available to read as a PDF.

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Here we describe a fast an efficient protocol for analyzing alternative splicing using SAJR.

Keywords

RNA-seq, alternative splicing

The authors declare no conflicting financial interests.

This is a list of supplementary files associated with this preprint. Click to download.

supplement0.zip
Scripts Scripts Zip file containing perl scripts used in the protocol and example R script.

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Associated Publications

Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans
by Caroline Heintz, Thomas K. Doktor, Anne Lanjuin, +11
Nature (31 May, 2017)

An open repository of community-contributed protocols sponsored by Nature Research.

Learn more about Protocol Exchange

Method Article

Thomas Doktor, Caroline Heintz, Brage Andresen, William Mair

Thomas Doktor

Andresen's lab, University of Southern Denmark

Corresponding Author

Caroline Heintz

Harvard T. H. Chan School of Public Health

Brage Andresen

Andresen's lab, University of Southern Denmark

William Mair

Harvard T. H. Chan School of Public Health

Version History

CURRENT STATUS: Posted

Version 1

Posted 12 Mar, 2018

No community comments so far

MetricsComments: 0HTML Views: ...

Subject Areas

Computational biology and bioinformatics

DOI:

10.1038/protex.2018.029

Download PDF

The full text of this article is available to read as a PDF.

License:

This work is licensed under a CC BY 4.0 License. Read Full License

Here we describe a fast an efficient protocol for analyzing alternative splicing using SAJR.

The authors declare no conflicting financial interests.

This is a list of supplementary files associated with this preprint. Click to download.

supplement0.zip
Scripts Scripts Zip file containing perl scripts used in the protocol and example R script.

Associated Publications

Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans
by Caroline Heintz, Thomas K. Doktor, Anne Lanjuin, +11
Nature (31 May, 2017)

An open repository of community-contributed protocols sponsored by Nature Research.

Learn more about Protocol Exchange

Method Article

Thomas Doktor, Caroline Heintz, Brage Andresen, William Mair

Thomas Doktor

Andresen's lab, University of Southern Denmark

Corresponding Author

Caroline Heintz

Harvard T. H. Chan School of Public Health

Brage Andresen

Andresen's lab, University of Southern Denmark

William Mair

Harvard T. H. Chan School of Public Health

DOI:

10.1038/protex.2018.029

Download PDF

License:

This work is licensed under a CC BY 4.0 License. Read Full License

Abstract

Keywords

RNA-seq, alternative splicing

Introduction

Procedure

Timing

Anticipated Results

References

Competing Interests

Supplementary Files

Comments

Version History

CURRENT STATUS: Posted

Version 1

No community comments so far

Metrics

Comments: 0

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Subject Areas

Computational biology and bioinformatics

Associated Publications

Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans

by Caroline Heintz, Thomas K. Doktor, Anne Lanjuin, +11

Nature (31 May, 2017)

An open repository of community-contributed protocols sponsored by Nature Research.

Learn more about Protocol Exchange

Method Article

Thomas Doktor, Caroline Heintz, Brage Andresen, William Mair

Thomas Doktor

Andresen's lab, University of Southern Denmark

Corresponding Author

Caroline Heintz

Harvard T. H. Chan School of Public Health

Brage Andresen

Andresen's lab, University of Southern Denmark

William Mair

Harvard T. H. Chan School of Public Health

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Version History

CURRENT STATUS: Posted

Version 1

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Metrics

Comments: 0

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Subject Areas

Computational biology and bioinformatics

DOI & PDF

DOI:

10.1038/protex.2018.029

Download PDF

License

License:

This work is licensed under a CC BY 4.0 License. Read Full License

Declarations

Abstract

Introduction

Procedure

Timing