This protocol describes how to collect urine samples in order to detect, identify and quantify extracellular RNA.
Method Article
Urine Collection Procedure for the analysis of extracellular RNA
https://doi.org/10.1038/protex.2015.099
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This protocol describes how to collect urine samples in order to detect, identify and quantify extracellular RNA.
Extracellular RNAs (exRNAs) have been identified in every biofluid that has been tested. They have been found in extracellular vesicles, ribonucleoprotein complexes and lipoprotein complexes. exRNAs are interesting because they may serve as signalling molecules between cells, they have the potential to serve as biomarkers for prediction and diagnosis of disease, and exRNAs or the extracellular particles that carry them might be used for therapeutic purposes.
The Sample and Assay Standards Working Group of the Extracellular RNA Communication Consortium (ERCC) is a group of laboratories funded by the U.S. National Institutes of Health to develop robust and standardized methods for collecting and processing of biofluids, separating different types of exRNA-containing particles and isolating and analyzing exRNAs. In our first joint endeavour, we held a series of conference calls and in-person meetings to survey the methods used among our members, placed them in the context of the current literature and used our findings to identify areas in which the identification of robust methodologies would promote rapid advancements in the exRNA field.
A full list of the protocols developed during this effort is available at the exRNA Portal, the ERCC's website ( "http://exrna.org/resources/protocols/":http://exrna.org/resources/protocols/ ). This protocol for collecting urine is one of the biofluid collection and processing methods compared in "the associated publication":http://www.journalofextracellularvesicles.net/index.php/jev/article/view/26533.
urine collection cup, sterile: Vendor: Fisher, Catalog # 22-610-131
FalconTM 15mL Conical Centrifuge Tubes, polypropylene: Vendor: Fisher, Catalog # 14-959-70C
FalconTM 50mL Conical Centrifuge Tubes, polypropylene: Vendor: Fisher, Catalog # 14-432-22
Sterile Microcentrifuge Tubes with Screw Caps: Vendor: Fisher, Catalog # 2681375
Avantec syringe filters, 25 mm, 0.8 μm cellulose acetate filter: Vendor: Cole Parmer, Catalog # EW-81054-40
Table 1: Equipment list in tabular format for urine collection procedure
See figure in Figures section.As an additional step to remove residual cells, the urine may be passed through a 0.8 μm cellulose acetate filter. This step should be performed slowly to avoid shear damage to cells or extracellular vesicles. This step may deplete the urine of larger vesicles.
These aliquots may be used for quality control.
The authors declare no competing financial interests.
This protocol has been posted on Protocol Exchange, an open repository of community-contributed protocols sponsored by Nature Portfolio. These protocols are posted directly on the Protocol Exchange by authors and are made freely available to the scientific community for use and comment.
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